Publications
Porfirio-Sousa AL, Tice AK, Morais L, Ribeiro GM, Blandenier Q, Dumack K, Eglit Y, Fry NW, Souza MBGE, Henderson TC, Kleitz-Singleton F, Singer D, Brown MW, Lahr DJG
Amoebozoan testate amoebae illuminate the diversity of heterotrophs and the complexity of ecosystems throughout geological time
045
2024
2024
PNAS
Jung P , Brand R, Briegel‑Williams L, Werner L, Jost E, Lentendu G, Singer D, Athavale R, Nürnberg DJ, Alfaro FD, Büdel B, Lakatos
The symbiotic alga Trebouxia fuels a coherent soil ecosystem on the landscape scale in the Atacama Desert
044
2024
Environmental Microbiome
Verdon V, Malard L, Collart F, Adde A, Yashiro E, Lara E, Mod H, Singer D, Niculita-Hirzel H, Guex N, Guisan A
Can we accurately predict the distribution of soil microorganism presence and relative abundance?
043
2024
Ecography
Fouet MPA, Magali Schweizer M, Singer D, Julien Richirt J, Quinchard S, Jorissen JF
Unravelling the distribution of three Ammonia species (Foraminifera, Rhizaria) in French Atlantic Coast estuaries using morphological and metabarcoding approaches
042
2024
Marine Micropaleontology
Bruni EP, Rusconi O, Broennimann O, Adde A, Jauslin R, Krashevska V, Kosakyan A, Armynot du Châtelet E, Alcino JPB, Beyens L, Blandenier Q, Bobrov A, Burdman L, Duckert C, Fernández LD, Souza MBG, Heger TJ, Koenig I, Lahr DJG, McKeown M, Meisterfeld R, Singer D, Voelcker E, Wilmshurst J, Wohlhauser S, Wilkinson DM, Guisan A, Mitchell EAD
Global distribution modelling of a conspicuous Gondwanian soil protist reveals latitudinal dispersal limitation and range contraction in response to climate warming
041
2024
Diversity and Distributions
DOI: 10.1111/ddi.13779
Dumack K, Lara E, Duckert C, Ermolaeva E, Siemensma F, Singer D, Krashevska V, Lamentowicz M, Mitchell EAD
It’s time to consider the Arcellinida shell as a weapon
040
2024
European Journal of Protistology
Mota M, Fantasia S, Faggion A, Lamy F, Singer D, Rienth M, Heger T, Delabays N, Zufferey V, Sonnard R, Marchand D
Conception d’itinéraires innovants de couverture du sol sans herbicides en viticulture - présentation de la parcelle expérimentale on-station du projet CV-VigneSol
039
2024
Vignes et Vergers
Technical articles
Marchand D, Sonnard R, Mota M, Fantasia S, Faggion A, Lamy F, Singer D, Rienth M, Heger T, Delabays N, Zufferey V
Conception d’itinéraires innovants de couverture du sol sans herbicide en viticulture-réseau on-farm du projet de recherche CV-VigneSol (article 2/2)
038
2024
Vignes et Vergers
Technical articles
Singer D, Fouet MPA, Schweizer M, Mouret A, Quinchard S, Jorissen FJ
Unlocking foraminiferal genetic diversity on estuarine mudflats with eDNA metabarcoding
037
2023
2023
Science of the Total Environment
González-Miguéns R, Cano E, Guillén-Oterino A, Quesada A, Lahr DJG, Tenorio-Rodríguez D, de Salvador-Velasco D, Velázquez D, Carrasco-Braganza MI, Patterson RT, Lara E, Singer D
A needle in a haystack: A new metabarcoding approach to survey diversity at the species level of Arcellinida (Amoebozoa: Tubulinea)
036
2023
Molecular Ecology Resources
Velasco-González I, Lara E, Singer D, de Cos-Gandoy A, García-Rodríguez M, Murciano A, Pérez-Uz B, Williams R, Sanchez-Jimenez A, Martín-Cereceda M
Diversity of DNA Sequences from Pathogenic and Potentially Pathogenic Eukaryotic Microorganisms in Protected Granite Mountain Rocks
035
2023
Diversity
Brinkmann I, Schweizer M, Singer D, Quinchard S, Barras C, Bernhard JM, Filipsson HL
Through the eDNA looking glass: Responses of fjord benthic foraminiferal communities to contrasting environmental conditions
034
2023
Journal of Eukaryotic Microbiology
Seppey CVW, Lara E, Broennimann O, Guisan A, Malard L, Singer D, Yashiro E, Fournier B
Landscape structure is a key driver of soil protist diversity in meadows in the Swiss Alps
033
2023
Landscape Ecology
Jorissen FJ, Fouet MPA, Singer D, Howa H
The Marine Influence Index (MII): A Tool to Assess Estuarine Intertidal Mudflat Environments for the Purpose of Foraminiferal Biomonitoring
031
2022
Water
Fouet MPA, Singer D, Coynel A, Héliot S, Howa H, Lalande J, Mouret A, Schweizer M, Tcherkez G, Jorissen FJ
Foraminiferal Distribution in Two Estuarine Intertidal Mudflats of the French Atlantic Coast: Testing the Marine Influence IndexForaminiferal Distribution in Two Estuarine Intertidal Mudflats of the French Atlantic Coast: Testing the Marine Influence Index
030
2022
Water
Singer D, Seppey CVW, Lentendu G, Dunthorn M, Bass D, Belbahri L, Blandenier Q, Debroas D, de Groot GA, de Varga C, Domaizon I, Duckert C, Izaguirre I, Koenig I, Mataloni G, Schiaffino MR, Mitchell EAD, Geisen S, Lara E
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems
029
2021
2021
Environment International
DOI: 10.1016/j.envint.2020.106262
Fernández LD, Seppey CVW, Singer D, Fournier B, Tatti D, Mitchell EAD, Lara E
Niche conservatism drives the elevational diversity gradient in major groups of free‑living soil unicellular eukaryotes
027
2021
Microbial Ecology
Nasser NA, Gregory BRB, Singer D, Patterson RT, Roe HM
Erugomicula, a new genus of Arcellinida (testate lobose amoebae)
026
2021
Palaeontologia Electronica
Izaguirre I, Unrein F, Schiaffino MR, Lara E, Singer D, Balagué V, Gasol JM, Massana R
Phylogenetic diversity and dominant ecological traits of freshwater Antarctic Chrysophyceae
025
2021
Polar Biology
Bengtsson F, Rydin H, Baltzer JL, Bragazza L, Bu Z J, Caporn SJM, Dorrepaal E, Flatberg KI, Galanina O, Gałka M, Ganeva A, Goia I, Goncharova N, Hájek M, Haraguch A, Harris LI, Humphreys E, Jiroušek M, Kajukało K, Karofeld E, Koronatova NG, Kosykh NP, Laine AM, Lamentowicz M, Lapshina E, Limpens J, Linkosalmi M, Ma J‐Z, Mauritz M, Mitchell EAD, Munir TM, Natali SM, Natcheva R, Payne RJ, Philippov DA, Rice SK, Robinson S, Robroek BJM, Rochefort L, Singer D, Stenøien HK, Tuittila E S, Vellak K, Waddington JM, Granath G
Environmental drivers of Sphagnum growth in peatlands across the Holarctic region
024
2021
Journal of Ecology
Singer D, Duckert C, Petr Heděenec P, Lara E, Hiltbrunner E, Mitchell EAD
High-throughput sequencing of litter and moss eDNA reveals a positive correlation between the diversity of Apicomplexa and their invertebrate hosts across alpine habitats
023
2020
2020
Soil Biology and Biochemistry
Marcisz K, Jassey VEJ, Kosakyan A, Krashevska V, Lahr DJG, Lara E, Lamentowicz Ł, Lamentowicz M, Macumber A, Mazei Y, Mitchell EAD, Nasser NA, Patterson RT, Roe HM, Singer D, Tsyganov AN, Fournier B
Testate Amoeba Functional Traits and Their Use in Paleoecology
022
2020
Frontiers in Ecology and Evolution
Mod HK, Scherrer D, Di Cola V, Broennimann O, Blandenier Q, Breiner FT, Buri A, Goudet J, Guex, N, Lara E, Mitchell EAD, Niculita Hirzel H, Pagni M, Pellissier L, Pinto Figueroa E, Sanders IR, Schmidt BR, Seppey CVW, Singer D, Ursenbacher S, Yashiro E, van der Meer JR, Guisan A
Greater topoclimatic control of above‐ versus below‐ground communities
021
2020
Global Change Biology
Seppey CVW, Broennimann O, Buri A, Yashiro E, Pinto‐Figueroa E, Singer D, Blandenier Q, Mitchell EAD, Niculita‐Hirzel H, Guisan A, Lara E
Soil protist diversity in the Swiss western Alps is better predicted by topo‐climatic than by edaphic variables
020
2020
Journal of Biogeography
DOI: 10.1111/jbi.13755
Singer D, Mitchell EAD, Payne RJ, Blandenier Q, Duckert C, Fernández LD, Fournier B, Hernández CE, Granath G, Rydin H, Bragazza L, Koronatova NG, Goia I, Harris LI, Kajukało K, Kosakyan A, Lamentowicz M, Kosykh NP, Vellak K, Lara E
Dispersal limitations and historical factors determine the biogeography of specialized terrestrial protists
019
2019
2019
Molecular Ecology
DOI:10.1111/mec.15117
Metz S, Singer D, Domaizon I, Unrein F, Lara E
Global distribution of Trebouxiophyceae diversity explored by high‐throughput sequencing and phylogenetic approaches
017
2019
Environmental microbiology
Velasco-González I, Sanchez-Jimenez A, Singer D, Murciano A, Díez-Hermano S, Lara E, Martín-Cereceda M
Rain-fed granite rock basins accumulate a high diversity of dormant microbial eukaryotes
016
2019
Microbial Ecology
Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E
Soil protists: a fertile frontier in soil biology
013
2018
FEMS Microbiology Reviews
Heděnec P, Singer D, Li J, Yao M, Lin Q, Li H, Kukla J, Cajthaml T, Frouzc J, Rui J, Li X
Effect of dry-rewetting stress on response pattern of soil prokaryotic communities in alpine meadow soil
012
2018
Applied Soil Ecology
Granath G, Rydin H, Baltzer JL, Bengtsson F, Boncek N, Bragazza L, Bu ZJ, Caporn SJM, Dorrepaal E, Galanina O, Gałka M, Ganeva A, Gillikin DP, Goia I, Goncharova N, Hájek M, Haraguchi A, Harris LI, Humphreys E, Jiroušek M, Kajukało K, Karofeld E, Koronatova NG, Kosykh NP, Lamentowicz M, Lapshina E, Limpens J, Linkosalmi M, Ma JZ, Mauritz M, Munir TM, Natali S, Natcheva R, Noskova M, Payne RJ, Pilkington K, Robinson S, Robroek BJM, Rochefort L, Singer, D, Stenøien HK, Tuittila ES, Vellak K, Verheyden A, Waddington JM, Rice SK
Environmental and taxonomic controls of carbon and oxygen stable isotope composition in Sphagnum across broad climatic and geographic ranges
011
2018
Biogeosciences
Szelecz I, Lösch S, Seppey CVW, Lara E, Singer D, Sorge F, Tschui J, Perotti MA, Mitchell EAD
Comparative analysis of bones, mites, soil chemistry, nematodes and soil micro eukaryotic communities of a suspected homicide to estimate a long post mortem interval
010
2018
Scientific Reports
DOI: 10.1038/s41598 017 18179 z
Geisen S, Mitchell EAD, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore Donno AM, Heger TJ, Jassey VEJ, Krashevska V, Lahr DJG, Marcisz K, Mulot M, Payne R, Singer D, Anderson OR, Charman DJ, Ekelund F, Griffiths BS, Rønn R, Smirnov A, Bass D, Belbahri L, Berney C, Blandenier Q, Chatzinotas A, Clarholm M, Dunthorn M, Feest A, Fernandez Parra LD, Foissner W, Fournier B, Gentekaki E, Hajek M, Helder J, Jousset A, Koller R, Kumar S, La Terza A, Lamentowicz M, Mazei Y, Santos SS, Seppey CVW, Spiegel FW, Walochnik J, Winding A, Lara E
Soil protistology rebooted: 30 fundamental questions to start with
009
2017
2017
Soil Biology and Biochemistry
DOI: 10.1016/j.soilbio.2017.04.001
Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
007
2017
Nature Ecology & Evolution
DOI: 10.1038/s41559 017 0091